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Supplementary Figures
S1-S6-S7-S12: Descriptive analysis of the vaginal microbiome (species, ARGs and MGEs)
S3-S5: Cross-validation of ARGs detection and distribution across CSTs
S2-S8: Longitudinal analysis of α-diversity metrics for ARGs and MGEs across CSTs
S4-S9-S10: Species-ARGs correlation analysis
S11: Conceptual validation of the PRDI
Supplementary Tables
T1-T8-T9: Descriptive statistics of patients involved in the InSPIRe study
T2-T6-T7: Sp-ARGs count table & SparCC correlation matrices
T3-T4-T5: Differential abundance analysis of species, ARGs and MGEs across CSTs
T10-T11-T12-T13-T14: Differential abundance analysis of species, ARGs and MGEs across clinical groups
Statistical Reports
R1-R2: α-diversity comparison across CSTs (InSPIRe)
R3-R4: α-diversity comparison across CSTs (External Dataset)
R5: β-diversity comparison across CSTs
R6-R7: GLMMs for α-diversity across pregnancy outcome groups (univariate)
R8-R9: GLMMs for α-diversity across pregnancy outcome groups (multivariate)
R10: β-diversity comparison across pregnancy outcome groups
Download Data
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iTOL
InSPIRe Consortium
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Raw read count tables
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Normilized read count tables
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Metadata
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PhenoARGTree (for PRDI calculation)
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InSPIRe Moonbase 16S Tree (for phylogenetic diversity calculation)
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