Significance codes:
() p < 0.001, () p < 0.01, () p < 0.05, (.) p < 0.1

β-diversity comparison across CSTs

Report 5: PERMANOVA analysis of β-diversity across vaginal community state types (CSTs) in inclusion (IN) and delivery (DR) samples.

Species

Permutation test for adonis under reduced model
Permutation: free
Number of permutations: 999
formula = distance ~ CST

data: IN Samples

Df	SumOfSqs	R2	F	Pr(>F)
Model 4	187.26	0.48595	245.79	0.001 (***)
Residual 1040	198.09	0.51405
Total 1044	385.35	1.00000

data: DR Samples

Df	SumOfSqs	R2	F	Pr(>F)
Model 4	150.20	0.43066	171.52	0.001 (***)
Residual 907	198.56	0.56934
Total 911	348.76	1.00000

Antibiotic Resistance Genes (ARG)

Permutation test for adonis under reduced model
Permutation: free
Number of permutations: 999
formula = distance ~ CST

Data: genes detected IN Samples

	Df	SumOfSqs	R2	F	Pr(>F)
Model	4	13.485	0.06883	11.253	0.001 (***)
Residual	609	182.445	0.93117
Total	613	195.930	1.00000

Data: genes detected DR Samples

Df	SumOfSqs	R2	F	Pr(>F)
Model 4	9.757	0.06153	7.8352	0.001(***)
Residual 478	148.816	0.93847
Total 482	158.574	1.00000

Mobile Genetic Element (MGE)

Permutation test for adonis under reduced model
Permutation: free
Number of permutations: 999
formula = distance ~ CST

Data: genes detected IN Samples

Df	SumOfSqs	R2	F	Pr(>F)
Model 4	17.527	0.09129	15.596	0.001 (***)
Residual 621	174.473	0.90871
Total 625	192.000	1.00000

Data: genes detected DR Samples

Df	SumOfSqs	R2	F	Pr(>F)
Model 4	12.77	0.08088	11.043	0.001 (***)
Residual 502	145.12	0.91912
Total 506	157.89	1.00000